90 lines
2.8 KiB
BibTeX
90 lines
2.8 KiB
BibTeX
@article{aracena2009robustness,
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title={On the robustness of update schedules in Boolean networks},
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author={Aracena, Julio and Goles, Eric and Moreira, Andr{\'e}s and Salinas, Luis},
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journal={Biosystems},
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volume={97},
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number={1},
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pages={1--8},
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year={2009},
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publisher={Elsevier}
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}
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@article{goles2010block,
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title={Block-sequential update schedules and Boolean automata circuits},
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author={Goles, Eric and Noual, Mathilde},
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journal={Discrete Mathematics \& Theoretical Computer Science},
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number={Proceedings},
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year={2010},
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publisher={Episciences. org}
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}
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@article{helikar2011boolean,
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title={Boolean modeling of biochemical networks},
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author={Helikar, Tomas and Kochi, Naomi and Konvalina, John and A Rogers, Jim},
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journal={The Open Bioinformatics Journal},
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volume={5},
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number={1},
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year={2011}
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}
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@article{schwab2020concepts,
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title={Concepts in Boolean network modeling: What do they all mean?},
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author={Schwab, Julian D and K{\"u}hlwein, Silke D and Ikonomi, Nensi and K{\"u}hl, Michael and Kestler, Hans A},
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journal={Computational and structural biotechnology journal},
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volume={18},
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pages={571--582},
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year={2020},
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publisher={Elsevier}
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}
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@article{bornholdt2008boolean,
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title={Boolean network models of cellular regulation: prospects and limitations},
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author={Bornholdt, Stefan},
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journal={Journal of the Royal Society interface},
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volume={5},
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number={suppl\_1},
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pages={S85--S94},
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year={2008},
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publisher={The Royal Society}
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}
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@article{pauleve2020reconciling,
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title={Reconciling qualitative, abstract, and scalable modeling of biological networks},
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author={Paulev{\'e}, Lo{\"\i}c and Kol{\v{c}}{\'a}k, Juri and Chatain, Thomas and Haar, Stefan},
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journal={Nature communications},
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volume={11},
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number={1},
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pages={4256},
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year={2020},
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publisher={Nature Publishing Group UK London}
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}
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@article{mussel2010boolnet,
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title={BoolNet—an R package for generation, reconstruction and analysis of Boolean networks},
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author={M{\"u}ssel, Christoph and Hopfensitz, Martin and Kestler, Hans A},
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journal={Bioinformatics},
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volume={26},
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number={10},
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pages={1378--1380},
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year={2010},
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publisher={Oxford University Press}
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}
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@article{naldi2018colomoto,
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title={The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks},
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author={Naldi, Aur{\'e}lien and Hernandez, C{\'e}line and Levy, Nicolas and Stoll, Gautier and Monteiro, Pedro T and Chaouiya, Claudine and Helikar, Tom{\'a}{\v{s}} and Zinovyev, Andrei and Calzone, Laurence and Cohen-Boulakia, Sarah and others},
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journal={Frontiers in physiology},
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volume={9},
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pages={680},
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year={2018},
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publisher={Frontiers Media SA}
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}
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@book{rosen2019discrete,
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author = {Rosen, Kenneth H.},
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title = {Discrete Mathematics and Its Applications},
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edition = {8th},
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publisher = {McGraw-Hill Education},
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year = {2019}
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} |